Single Cell Protein Analysis: Methods and Protocols by Anup K. Singh, Aarthi Chandrasekaran PDF

By Anup K. Singh, Aarthi Chandrasekaran

ISBN-10: 1493929860

ISBN-13: 9781493929863

ISBN-10: 1493929879

ISBN-13: 9781493929870

This quantity highlights contemporary advancements in stream cytometry, affinity assays, imaging, mass spectrometry, microfluidics and different applied sciences that allow research of proteins on the unmarried telephone point. The publication additionally comprises chapters protecting a set of biochemical and biophysical equipment in a position to making a whole gamut of proteomic measurements, together with research of protein abundance or expression, protein interplay networks, post-translational variations, translocation and enzymatic job. Written within the hugely winning Methods in Molecular Biology series structure, chapters comprise introductions to their respective subject matters, lists of the mandatory fabrics and reagents, step by step, quite simply reproducible laboratory protocols and tips about troubleshooting and averting identified pitfalls.

Authoritative and thorough, Single mobilephone Protein research: equipment and Protocols turns out to be useful to researchers and scholars in organic and biomedical sciences who've an curiosity in proteomic measurements in cells.

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As a result, the PDMS based cell trap is stained itself and it would be impossible to distinguish an empty cell trap from an occupied cell trap. 15. It is important to filter the E. coli bacteria sample before introducing it to the microfluidic device to prevent dust particles from the medium solution from blocking the cell traps. It is advisable to use filters with a pore size of 20 μm or 10 μm. Smaller pore sizes should be avoided as they also filter out the bacteria. 24 Simone Stratz and Petra S.

1007/978-1-4939-2987-0_4, © Springer Science+Business Media New York 2015 47 48 Adeeti V. Ullal and Ralph Weissleder Fig. 1 Overview of ABCD method. (a) Patient samples are enriched and harvested for cells of interest. For fine needle aspirates or other low-cellularity samples, use of microfluidic devices will help to increase sample yield and recovery. For details on the optimized microfluidic device built for these studies please see [ 10 ]. ( b ) Antibodies are barcoded with specific DNA tags and are attached via a photocleavable linker.

Therefore, do not reduce the flow-rate while flushing the bacteria sample into the device. Moreover, do not flush more than 25 μL of the bacteria sample into the device, as a high number of excess bacteria increase the risk of unintentional bacteria sticking to the PDMS outside the cell traps. 17. This long washing step is used to ensure that the bacteria sample is completely flushed out of the device. Thereby only bacteria physically trapped within the cell traps remain within the device. 18. As the lysis of E.

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Single Cell Protein Analysis: Methods and Protocols by Anup K. Singh, Aarthi Chandrasekaran


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